< Master index Index for chronux_1_50\spikesort >

Index for chronux_1_50\spikesort

Matlab files in this directory:

 CB_colorshiftCB_COLORSHIFT Callback for UIcolorshift.
 CB_logmenuCB_LOGMENU Callback for UIlogmenu.
 CB_movieplayerCB_MOVIEPLAYER Callback for UImyfunc.
 CB_subzoomCB_MYFUNC Callback for UImyfunc.
 CORE_histxtCORE_HISTXT Core computational routine for HISTXT. MEX
 CORE_histxyCORE_HISTXY Core computational routine for HISTXY. MEX
 CORE_leadingedgesCORE_LEADINGEDGES Core computational routine for LEADINGEDGES. MEX
 CORE_mindistCORE_MINDIST Core computational routine for MINDIST. MEX
 CORE_minmaxCORE_MINMAX Core computational routine for MINMAX. MEX
 CORE_pairdistCORE_PAIRDIST Core computational routine for PAIRDIST. MEX
 CORE_pxcorrCORE_PXCORR Core computational routine for PXCORR. MEX
 CORE_resetintegratorCORE_RESETINTEGRATOR Core computational routine for RESETINTEGRATOR. MEX
 COREmexCOREMEX Compile CORE_ functions.
 CdgyCdgy Dark gray color vector.
 ClgyClgy Light gray color vector.
 CmarCmar Maroon color vector.
 CmblCmbl Muted blue color vector.
 CmgrCmgr Muted green color vector.
 CmrdCmrd Muted red color vector.
 ContentsSBM Matlab utilities
 SpikeSortingDemo% Demonstration code for the spike sorter derived from the Fee et al.
 SpikeSortingQuickReference%%%%%%%%%%%%%%%%%%%%%%%%%%%%% SORTING %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 UIcolorshiftUIcolorshift Creates an interactive colorbar.
 UIlogmenuUIlogmenu Adds a context menu for toggling logarithmic scaling.
 UImovieplayerUImovieplayer Show a 3-D matrix as an XY-T movie.
 UIsubzoomUIsubzoom Adds a context menu for zooming subplots to full figure.
 aggtreeAGGTREE Generates a graphical summary of an aggregation procedure.
 alignwaveformsALIGNWAVEFORMS Finds best alignment of waveforms to a reference.
 anglehistANGLEHIST Magnitude-weighted angle histogram of polar data.
 bool2onoffBOOL2ONOFF Substitutes 'on' for non-zero and 'off' for zero input.
 busyfigureBUSYFIGURE Disable/restore a UI figure.
 buttersimpleBUTTERSIMPLE Fixed order Butterworth digital filter design.
 callerfileCALLERFILE Name of calling M-file.
 clusterXTclusterXT temporary utility to show clusters
 cmplx2rgbCMPLX2RGB Convert complex matrix to an imageable RGB form.
 cmtmCMTM Coherence function estimate using the multitaper method.
 compareAssignmentsCOMPAREASSIGNMENTS Computes a quality measure of the similarity between assignments.
 convnsepCONVNSEP N-dimensional convolution with separable kernels.
 copyaxesCOPYAXES Duplicate axes in a new figure.
 copyfigCOPYFIG Duplicate all children of a figure.
 correlationsCORRELATIONS another temporary utility to show clusters
 datetime2indDATETIME2IND Converts date/time lists to serial time indices.
 embedEMBED Time-series lag embedding.
 errorareaERRORAREA Plot with confidence region.
 fancyFANCY Collection of graphics test figures.
 filtermFILTERM One-dimensional digital filter (memory efficient).
 filterzmFILTERZM Zero-phase 1-D digital filter (memory efficient).
 find_colorbarFIND_COLORBAR Finds the colorbar associated with a given axes.
 find_uimenuFIND_UIMENU Finds/creates an item in a UIcontextmenu.
 gausskernelGAUSSKERNEL Creates a discretized N-dimensional Gaussian kernel.
 histndHISTND N-Dimensional histogram
 histxtHISTXT Column-by-column Histograms.
 histxyHISTXY 2-Dimensional Density Histogram.
 histxyzHISTXYZ 3-Dimensional Density Histogram.
 isiQualityISIQUALITY Computes statistical measures of refactory period quality.
 isvectordISVECTORD Returns the orientation of a 1-D vector.
 jetmJETM Muted jet colormap.
 knnKNN Finds the K nearest neighbors in a reference matrix.
 lasterridLASTERRID Message ID associated with last error.
 leadingedgesLEADINGEDGES Marks 0 -> NONZERO transitions along data columns.
 linecLINEC Plots a line with color varying along its length.
 linelabelLINELABEL Labels plotted lines.
 maplecolorMAPLECOLOR Generates truecolor data in the default Maple color scheme.
 matlabversionMATLABVERSION Sortable version number for current Matlab.
 meandist_estimMEANDIST_ESTIM Estimate the average distance between vectors.
 merge_clustersMERGE_CLUSTERS Merge two clusters after automatic hierarchical aggregation.
 mindistMINDIST Finds indices of closest vectors.
 minmaxMINMAX Simultaneous overall smallest and largest components.
 mplotMPLOT Plot rows of a data matrix.
 niceNICE Custom plot prettification.
 onoff2boolONOFF2BOOL Substitutes 1 for 'on' and 0 for any other string.
 padmatrixPADMATRIX Pad a matrix.
 pairdistPAIRDIST Computes a pairwise Euclidean distance matrix.
 pcasvdPCASVD Principal Components Analysis via (mean-subtracted) SVD.
 printfPRINTF Macro to display formatted text.
 progressBarPROGRESSBAR Improved progress indicator.
 ps2pdfPS2PDF Converts a PostScript file into Adobe PDF format.
 pxcorrPXCORR Efficient cross-correlation for point process data.
 raise_mePulls the clicked object to the top of the ui stack; useful
 rasterizeRASTERIZE Converts a list of events into a binary time series.
 removeoffsetREMOVEOFFSET Remove DC offset using various techniques.
 report_addpageREPORT_ADDPAGE Builds up a PS report by appending Matlab figures.
 rescaleRESCALE Rescales a data set.
 resetintegratorRESETINTEGRATOR Running counter with resets.
 saturateSATURATE Add saturation markers to a colormap.
 showclustSHOWCLUST temporary utility to show clusters
 sindataSINDATA Generate noisy sinuisoidal data.
 smooth3fSMOOTH3F Smooth 3D data (fast version).
 sortAssignmentsSORTASSIGNMENTS Renumbers assignments
 split_clusterSPLIT_CLUSTERS Split a cluster after automatic hierarchical aggregation.
 ss_aggregateSS_AGGREGATE ISI-restricted heirarchical cluster aggregation.
 ss_dejitterSS_DEJITTER Aligns waveform peaks.
 ss_energySS_ENERGY Interface energy based cluster similarity computation.
 ss_kmeansSS_KMEANS K-means clustering.
 ss_outliersSS_OUTLIERS K-means based outlier detection.
 ssg_databrowse2dSSG_DATABROWSE2D Feature projection GUI in 2D (work in progress).
 ssg_databrowse3dSSG_DATABROWSE3D Feature projection GUI in 3D (work in progress).
 ssg_featureselectSSG_FEATURESELECT M-file for ssg_featureselect.fig
 ssgtesttemporary script to translate the SSG_DATABROWSE functions into a GUI.
 startup
 strmatchreSTRMATCHRE Select strings that match a regular expression.
 structcatSTRUCTCAT Concatenates two structures field by field.
 structindexSTRUCTINDEX Indexes each field in a structure of arrays.
 structpackSTRUCTPACK Copies workspace variables into the fields of a structure.
 structunpackSTRUCTUNPACK Copies the fields of a structure into the workspace.
 thresholded_peaksTHRESHOLDED_PEAKS Finds height/width of threshold crossing peaks.
 tintmapTINTMAP Tinted monochrome color map.
 tokenizeTOKENIZE Break string into tokens.
 topTOP Simplifies 3-D axes.
 triggereventsTRIGGEREVENTS Extracts data samples before/after a trigger signal.
 xrayXRAY Inverted gray-scale color map.

Other Matlab-specific files in this directory:

Dependency Graph


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